PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G056300.1.p
Common NameGLYMA_12G056300, LOC100788471
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 554aa    MW: 61370.2 Da    PI: 6.6209
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G056300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.4e-15163222155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Glyma.12G056300.1.p 163 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 222
                          57*******************666664477446*************************98 PP

2AP247.16.1e-15267316355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Glyma.12G056300.1.p 267 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 316
                          9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-22163232No hitNo description
SuperFamilySSF541712.75E-17163232IPR016177DNA-binding domain
PfamPF008477.2E-12163222IPR001471AP2/ERF domain
PROSITE profilePS5103219.256164230IPR001471AP2/ERF domain
SMARTSM003805.8E-30164236IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-16164231IPR001471AP2/ERF domain
PRINTSPR003672.4E-6165176IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-18265326IPR016177DNA-binding domain
CDDcd000184.17E-24265326No hitNo description
PROSITE profilePS5103219.375266324IPR001471AP2/ERF domain
SMARTSM003808.6E-33266330IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-18266325IPR001471AP2/ERF domain
PfamPF008471.5E-9267316IPR001471AP2/ERF domain
PRINTSPR003672.4E-6306326IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MNNNWLSFPL SPTHSSLPAH DLQATQYHQF SLGLVNENMD NPFQNHDWNL INTHSSNEIP  60
KVADFLGVSK SENQSDLAAL NEIHSNDSDY LFTNNSLVPM QNPVLDTPSN EYQENANSNL  120
QSLTLSMGSG KDSTCETSGE NSTNTTVEVA PRRTLDTFGQ RTSIYRGVTR HRWTGRYEAH  180
LWDNSCRREG QSRKGRQVYL GGYDKEEKAA RAYDLAALKY WGTSTTTNFP ISNYEKELDE  240
MKHMTRQEFV AAIRRKSSGF SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTE  300
EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV KAILESNTLP IGGGAAKRLK EAQALESSRK  360
REEMIALGSS STFQYGTSAS SSRLHAYPLM QHHHQFEQPQ PLLTLQNHDI SSSHFSHQQD  420
PLHHQGYIQT QLQLHQQSGA SSYSFQNNAQ FYNGYLQNHP ALLQGMMNMG SSSSSSSVLE  480
NNNSNNNNNN VGGFVGSGFG MASNATAGNT VGTAEELGLV KVDYDMPAGG YGGWSAADSM  540
QTSNGGVFTM WND*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.342690.0somatic embryo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6773810.0EU677381.1 Glycine max PLETHORA 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592171.10.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT2 isoform X1
SwissprotQ5YGP70.0PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLI1LQI00.0I1LQI0_SOYBN; Uncharacterized protein
STRINGGLYMA12G06010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49423152
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.10.0AP2 family protein